PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500626.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 358aa    MW: 40320 Da    PI: 6.3547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.8e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+ ++++G g+W++ ++  g++R++k+c++rw +yl
   XP_004500626.1 14 KGPWTPEEDQKLVHHIHKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding55.11.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
   XP_004500626.1  67 RGKFSQEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.61961IPR017930Myb domain
SuperFamilySSF466891.26E-3111108IPR009057Homeodomain-like
SMARTSM007171.0E-151363IPR001005SANT/Myb domain
PfamPF002499.0E-181461IPR001005SANT/Myb domain
CDDcd001671.77E-121661No hitNo description
PROSITE profilePS5129427.27862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2765117IPR009057Homeodomain-like
SMARTSM007179.2E-1766114IPR001005SANT/Myb domain
PfamPF002492.5E-1667112IPR001005SANT/Myb domain
CDDcd001674.21E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVHHIH KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DIISTLPYLL ALANMTEMME HHQSWDDQQA SMSLLQAETV HLAKLQCLQY  180
LLQQSSNPLN IINSNNNSYD QNTLITNMDQ QQQSLSLLNT ISNVKQNQII DNAATSFSDM  240
NIDNDNSQPL HHQNILLPHF LDQVSFNSQS CLNNNEQGQG TIITTNNNNF ATVDDETLWI  300
NINIPSSSSS APISIIPPNA NNPGDASSST STTSYGVGGP CSYWSELFFE DPIMHDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500626.10.0PREDICTED: transcription factor MYB39
TrEMBLA0A072V9U01e-172A0A072V9U0_MEDTR; Myb transcription factor
STRINGGLYMA04G11040.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-99myb domain protein 93